Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2rd21B.e11-21
Source: [PDB-id:chain] 2rd2:B (&rarr PDB)
Source: Information GLUTAMINYL-TRNA SYNTHETASE MUTANT C229R WITH BOUND ANALOG 5'-O-[N-(L-GLUTAMINYL)-SULFAMOYL]ADENOSINE
Source: Compound GLUTAMINE TRNA
Source: Resolution 2.60 ANGSTROMS.
Position (11, 21)
Primary structure ('_': anchors) _AAGCGGUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C4'-exo, 7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 10 →
4 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Bifurcated/O2' trans
3 3 9 O2'/Watson-Crick trans y
4 7 8 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters