Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Hairpin pdb2qwy1C.e7-25
Source: [PDB-id:chain] 2qwy:C (&rarr PDB)
Source: Information SAM-II RIBOSWITCH BOUND TO S-ADENOSYLMETHIONINE
Source: Compound SAM-II RIBOSWITCH
Source: Resolution 2.80 ANGSTROMS.
Position (7, 25)
Primary structure ('_': anchors) _GAUUUAACCGUAUUGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo, 7: C1'-endo, 11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 10 11
4 13 14
5 16 17
6 17 18
7 18 19
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 7 12 Hoogsteen/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters