Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2qnh1z.e54-62
Source: [PDB-id:chain] 2qnh:z (&rarr PDB)
Source: Information INTERACTIONS AND DYNAMICS OF THE SHINE-DALGARNO HELIX IN THE 70S RIBOSOME. THIS FILE, 2QNH, CONTAINS THE 30S RIBOSOME SUBUNIT, TWO TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1VSP.
Source: Compound P-SITE TRNAFMET
Source: Resolution 3.83 ANGSTROMS.
Position (54, 62)
Primary structure ('_': anchors) _UUCAAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 6: C2'-endo, 7: C2'-exo, 8: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 9 ↑
3 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick trans
3 3 5 O2'/Hoogsteen ?
4 3 6 O2'/Watson-Crick ?
5 6 9 Bifurcated/O2' ?
6 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters