Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-4-Internal Loop pdb2qnh1y.n591-607
Source: [PDB-id:chain] 2qnh:y (&rarr PDB)
Source: Information INTERACTIONS AND DYNAMICS OF THE SHINE-DALGARNO HELIX IN THE 70S RIBOSOME. THIS FILE, 2QNH, CONTAINS THE 30S RIBOSOME SUBUNIT, TWO TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1VSP.
Source: Compound 16S RNA
Source: Resolution 3.83 ANGSTROMS.
Position (584, 612), (591, 607)
Primary structure ('_': anchors) _GAAAGA_-_GGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C4'-exo, 4: C2'-exo, 5: C2'-exo, 6: C2'-exo, 7: C4'-exo, 10: C4'-exo, 11: C2'-exo, 12: C2'-exo, 13: C2'-exo, 14: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 5 ↑
4 9 10 ↑
5 10 11 ↑
6 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 13 Bifurcated/O2' trans
3 7 10 Watson-Crick/Watson-Crick cis y
4 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters