Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Hairpin pdb2qh41A.e6-13
Source: [PDB-id:chain] 2qh4:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF THE U85 C/D-H/ACA SCARNA 5' TERMINAL HAIRPIN LOOP
Source: Compound HUMAN U85 C/D-H/ACA SCARNA
Source: Resolution NOT APPLICABLE.
Position (6, 13)
Primary structure ('_': anchors) _GAGUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: O4'-endo, 5: C2'-exo, 6: C3'-exo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 6 &larr
3 3 7 →
4 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 7 Hoogsteen/Sugar trans
3 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters