Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2qbz1X.e85-93
Source: [PDB-id:chain] 2qbz:X (&rarr PDB)
Source: Information STRUCTURE OF THE M-BOX RIBOSWITCH APTAMER DOMAIN
Source: Compound M-BOX RNA, YKOK RIBOSWITCH APTAMER
Source: Resolution 2.60 ANGSTROMS.
Position (85, 93)
Primary structure ('_': anchors) _GACAUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C1'-exo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 4 5
3 7 8
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 7 O2'/Watson-Crick ?
3 2 8 Hoogsteen/Sugar trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters