Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-1-Internal Loop pdb2pxv1B.n1-49
Source: [PDB-id:chain] 2pxv:B (&rarr PDB)
Source: Information VARIANT 6 OF RIBONUCLEOPROTEIN CORE OF THE E. COLI SIGNAL RECOGNITION PARTICLE
Source: Compound 4.5 S RNA
Source: Resolution 2.00 ANGSTROMS.
Position (10, 40), (15, 38)
Primary structure ('_': anchors) _ACCA_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 7 8
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters