Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb2ply1E.e9-15
Source: [PDB-id:chain] 2ply:E (&rarr PDB)
Source: Information STRUCTURE OF THE MRNA BINDING FRAGMENT OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA.
Source: Compound RNA (5'-
Source: Resolution 2.60 ANGSTROMS.
Position (9, 15)
Primary structure ('_': anchors) _GGUCU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 3: C1'-exo, 4: C2'-endo, 5: C4'-exo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 7 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 5 Watson-Crick/Watson-Crick cis
3 3 4 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters