Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb2ow8Fy.n1096-1133
Source: [PDB-id:chain] 2ow8:y (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A 70S RIBOSOME-TRNA COMPLEX REVEALS FUNCTIONAL INTERACTIONS AND REARRANGEMENTS. THIS FILE, 2OW8, CONTAINS THE 30S RIBOSOME SUBUNIT, TWO TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1VSA.
Source: Compound 16S SMALL SUBUNIT RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.71 ANGSTROMS.
Position (1102, 1127), (1105, 1123)
Primary structure ('_': anchors) _ACU_-_UU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 5: C3'-exo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 6 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 5 6 Watson-Crick/Watson-Crick cis
3 5 8 Watson-Crick/O2' ?
4 6 8 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters