Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb2om7FH.n1-42
Source: [PDB-id:chain] 2om7:H (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS
Source: Compound FRAGMENT OF23S RRNA (H89)
FLIPPED INTERNAL
Source: Resolution 7.30 ANGSTROMS.
Position (3, 40), (6, 36)
Primary structure ('_': anchors) _UUU_-_GA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 5 8 &larr
4 6 7
5 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis y
2 2 7 Watson-Crick/Watson-Crick cis
3 3 6 Watson-Crick/Watson-Crick cis
4 5 6 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters