Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2om71J.n5-69
Source: [PDB-id:chain] 2om7:J (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS
Source: Compound FRAGMENT OF23S RRNA (H76)
Source: Resolution 7.30 ANGSTROMS.
Position (8, 66), (12, 62)
Primary structure ('_': anchors) _UCG_-_CGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 4 5
3 4 8
4 6 7
5 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis y
2 3 8 Watson-Crick/Watson-Crick cis
3 4 7 Watson-Crick/Watson-Crick cis y
4 5 6 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters