Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb2om71H.e17-25
Source: [PDB-id:chain] 2om7:H (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS
Source: Compound FRAGMENT OF23S RRNA (H89)
Source: Resolution 7.30 ANGSTROMS.
Position (17, 25)
Primary structure ('_': anchors) _GUCCACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 5 &larr
3 3 4 ↑
4 4 5 ↑
5 6 7 ↓
6 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 O2'/Bifurcated ?
2 1 9 Watson-Crick/Watson-Crick cis
3 2 7 O2'/Watson-Crick ?
4 2 8 Bifurcated/O2' trans
5 3 5 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters