Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2om71C.n19-76
Source: [PDB-id:chain] 2om7:C (&rarr PDB)
Source: Information STRUCTURAL BASIS FOR INTERACTION OF THE RIBOSOME WITH THE SWITCH REGIONS OF GTP-BOUND ELONGATION FACTORS
Source: Compound FRAGMENT OF 16S RRNA (H44)
Source: Resolution 7.30 ANGSTROMS.
Position (31, 64), (37, 59)
Primary structure ('_': anchors) _GAAGU_-_CCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 11 &larr
3 3 4 ↑
4 3 12 →
5 5 6 ↑
6 6 7 ↑
7 8 9 ↑
8 9 10 ↑
9 10 11 ↑
10 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Bifurcated/O2' trans
3 3 11 O2'/Bifurcated ?
4 5 10 Watson-Crick/Watson-Crick cis
5 6 9 Watson-Crick/Watson-Crick cis y
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters