Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-4-Internal Loop pdb2oiuFP.n20-41
Source: [PDB-id:chain] 2oiu:P (&rarr PDB)
Source: Information L1 RIBOZYME LIGASE CIRCULAR ADDUCT
Source: Compound L1 RIBOZYME RNA LIGASE
FLIPPED INTERNAL
Source: Resolution 2.60 ANGSTROMS.
Position (21, 40), (26, 35)
Primary structure ('_': anchors) _CUUA_-_GACC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C1'-exo, 4: C4'-endo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 10
3 4 5
4 4 11 &larr
5 5 6
6 7 8
7 8 9
8 9 10
9 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Bifurcated/O2' trans
3 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters