Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-5-Internal Loop pdb2ogoF0.n1716-1752
Source: [PDB-id:chain] 2ogo:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE RETAPAMULIN (SB-275833)
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.66 ANGSTROMS.
Position (1722, 1746), (1728, 1738)
Primary structure ('_': anchors) _GACGUAU_-_GCCAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-exo, 12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 8 9 ↑
2 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Hoogsteen/O2' ?
2 1 16 Watson-Crick/Watson-Crick cis
3 4 14 Sugar/Hoogsteen trans y
4 4 15 O2'/Bifurcated ?
5 5 7 Hoogsteen/Bifurcated cis y
6 7 8 Bifurcated/Hoogsteen cis
7 8 11 O2'/Bifurcated trans
8 8 12 Watson-Crick/O2' ?
9 9 10 Watson-Crick/Watson-Crick cis
10 12 16 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters