Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2ogo10.i595-618
Source: [PDB-id:chain] 2ogo:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE RETAPAMULIN (SB-275833)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.66 ANGSTROMS.
Position (595, 618)
Primary structure ('_': anchors) _GAGUCCGAAUAGGGCGGCAUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 7: C2'-exo, 11: C4'-exo, 14: C2'-exo, 24: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 7 ↑
3 12 13 ↑
4 14 15 ↑
5 15 16 ↑
6 17 18 ↑
7 19 20 &larr
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 13 Watson-Crick/Watson-Crick cis y
2 7 13 Watson-Crick/Watson-Crick cis y
3 11 12 Hoogsteen/O2' ?
4 22 23 Hoogsteen/O2' ?
5 22 24 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters