Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'20-Segment pdb2ogo10.i1840-1861
Source: [PDB-id:chain] 2ogo:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE RETAPAMULIN (SB-275833)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.66 ANGSTROMS.
Position (1840, 1861)
Primary structure ('_': anchors) _CUAAGGUAGCGAAAUUCCUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C4'-exo, 13: C4'-exo, 14: C2'-exo, 15: C4'-exo, 17: C4'-exo, 20: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		14: syn, 16: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 9 10 ↑
3 10 11 ↑
4 11 12 ↑
5 13 22 ↑
6 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Bifurcated/O2' ?
2 5 6 C/Hoogsteen cis y
3 12 14 Watson-Crick/O2' ?
4 17 19 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters