Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Hairpin pdb2ogo10.e1636-1652
Source: [PDB-id:chain] 2ogo:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE RETAPAMULIN (SB-275833)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.66 ANGSTROMS.
Position (1636, 1652)
Primary structure ('_': anchors) _GUAACUUCGGAAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C4'-exo, 13: C4'-exo, 14: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		10: syn, 13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 4 15 →
5 5 6 ↑
6 6 7 ↑
7 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 15 O2'/Watson-Crick ?
3 2 16 Bifurcated/O2' ?
4 3 15 O2'/Watson-Crick ?
5 4 13 Bifurcated/O2' trans y
6 6 11 Watson-Crick/Watson-Crick cis
7 7 10 Watson-Crick/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters