Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb2ognF0.n816-870
Source: [PDB-id:chain] 2ogn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-280080
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.56 ANGSTROMS.
Position (820, 866), (826, 859)
Primary structure ('_': anchors) _CCGAAG_-_UGUAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 4: C2'-exo, 7: C2'-exo, 8: O4'-endo, 14: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 11 →
3 5 6 ↑
4 9 10 ↑
5 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 3 4 Bifurcated/Hoogsteen cis y
3 4 13 O2'/Bifurcated ?
4 5 11 O2'/Bifurcated trans y
5 6 10 Watson-Crick/Watson-Crick cis
6 8 9 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters