Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb2ognF0.n1996-2133
Source: [PDB-id:chain] 2ogn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-280080
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.56 ANGSTROMS.
Position (1998, 2131), (2004, 2124)
Primary structure ('_': anchors) _UGGCGG_-_AGUCU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C2'-exo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 14 →
2 3 4 ↑
3 3 15 &larr
4 4 5 ↑
5 5 6 ↑
6 6 7 ↑
7 7 9 →
8 10 11 ↑
9 12 13 ↑
10 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis y
2 3 14 O2'/Bifurcated trans y
3 4 13 Watson-Crick/Watson-Crick cis
4 6 11 Watson-Crick/Watson-Crick cis
5 7 10 Watson-Crick/Watson-Crick cis
6 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters