Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-5-Internal Loop pdb2ognF0.n1722-1748
Source: [PDB-id:chain] 2ogn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-280080
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.56 ANGSTROMS.
Position (1723, 1747), (1729, 1739)
Primary structure ('_': anchors) _GACGUAU_-_GCCAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C4'-exo, 6: C4'-exo, 13: C4'-exo, 14: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5 ↑
2 8 9 ↑
3 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Hoogsteen/O2' ?
2 1 16 Watson-Crick/Watson-Crick cis y
3 3 15 O2'/Bifurcated ?
4 5 14 Watson-Crick/Watson-Crick trans y
5 7 8 Hoogsteen/Hoogsteen cis y
6 8 11 O2'/Bifurcated trans y
7 8 12 Watson-Crick/O2' ?
8 9 10 Watson-Crick/Watson-Crick cis
9 12 16 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters