Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-8-Internal Loop pdb2ogn10.n266-314
Source: [PDB-id:chain] 2ogn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-280080
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.56 ANGSTROMS.
Position (259, 323), (266, 314)
Primary structure ('_': anchors) _CCUCAA_-_GAACGAGC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		14: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 4 5 ↑
3 5 6 ↑
4 6 14 →
5 7 11 →
6 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Bifurcated/O2' ?
2 1 18 Watson-Crick/Watson-Crick cis
3 5 14 Watson-Crick/Watson-Crick cis
4 7 10 O2'/Bifurcated ?
5 8 9 Watson-Crick/Watson-Crick cis
6 17 18 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters