Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'18-Segment pdb2ogn10.i780-799
Source: [PDB-id:chain] 2ogn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-280080
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.56 ANGSTROMS.
Position (780, 799)
Primary structure ('_': anchors) _GAAAUGUAUUGAGGUACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 7: C2'-exo, 11: C4'-exo, 12: C4'-exo, 13: C4'-exo, 17: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 7 ↑
3 7 8 ↑
4 7 19 →
5 9 10 ↑
6 12 13 →
7 15 16 ↑
8 18 19 ↑
9 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 19 Watson-Crick/Watson-Crick cis
2 7 18 Watson-Crick/Bifurcated cis
3 8 17 Watson-Crick/Watson-Crick cis y
4 12 13 C/O2' ?
5 17 18 Hoogsteen/Hoogsteen cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters