Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'19-Segment pdb2ogn10.i1697-1717
Source: [PDB-id:chain] 2ogn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-280080
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.56 ANGSTROMS.
Position (1697, 1717)
Primary structure ('_': anchors) _ACUGUUUACCAAAAUCACA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
8: C4'-exo, 14: C2'-exo, 15: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 5 6
3 7 13
4 8 12 &larr
5 14 16
6 16 17
7 17 18
8 18 19
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 5 17 Watson-Crick/Watson-Crick cis
2 6 16 Watson-Crick/Watson-Crick cis y
3 8 13 Bifurcated/O2' trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters