Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Hairpin pdb2ogn10.e1637-1653
Source: [PDB-id:chain] 2ogn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-280080
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.56 ANGSTROMS.
Position (1637, 1653)
Primary structure ('_': anchors) _GUAACUUCGGAAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
9: C4'-exo, 11: C2'-exo, 14: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
10: syn, 13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 4 15
5 6 7
6 7 9
7 16 17
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 15 O2'/Watson-Crick ?
3 2 16 Bifurcated/O2' trans
4 3 15 Hoogsteen/O2' ?
5 4 12 Bifurcated/O2' ?
6 4 13 Bifurcated/Hoogsteen trans y
7 5 12 O2'/Bifurcated trans
8 6 11 Watson-Crick/Watson-Crick cis
9 7 10 Watson-Crick/Bifurcated trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters