Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-8-Internal Loop pdb2ogmF0.n801-885
Source: [PDB-id:chain] 2ogm:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-571519
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (807, 879), (816, 870)
Primary structure ('_': anchors) _CGCGUUUA_-_GUUGACCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 4 5
3 5 6
4 6 7
5 7 8
6 8 12
7 9 10
8 11 12
9 13 14
10 14 15
11 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 20 Watson-Crick/Watson-Crick cis
2 2 17 Watson-Crick/Watson-Crick cis
3 8 13 Watson-Crick/Watson-Crick cis
4 9 12 Watson-Crick/Watson-Crick cis y
5 10 11 Watson-Crick/Watson-Crick cis
6 17 18 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters