Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-8-Internal Loop pdb2ogm10.n1775-1810
Source: [PDB-id:chain] 2ogm:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-571519
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (1777, 1808), (1786, 1799)
Primary structure ('_': anchors) _CAAGUGGA_-_GAAAUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		17: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 4 5 ↑
3 5 6 ↑
4 6 7 ↑
5 8 9 ↑
6 8 14 →
7 11 12 ↑
8 12 13 ↑
9 14 15 ↑
10 15 16 ↑
11 18 19 ↑
12 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 20 Watson-Crick/Watson-Crick cis y
2 6 15 Watson-Crick/Watson-Crick cis
3 7 14 Hoogsteen/Sugar trans y
4 8 13 O2'/Watson-Crick ?
5 9 13 O2'/Watson-Crick ?
6 10 11 Watson-Crick/Watson-Crick cis
7 17 18 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters