Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'19-Segment pdb2ogm10.i456-476
Source: [PDB-id:chain] 2ogm:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-571519
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (456, 476)
Primary structure ('_': anchors) _AGUGAAAGAGAACCUGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C2'-exo, 8: C4'-exo, 17: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		11: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 6 7 ↑
5 7 10 ↑
6 8 10 ↓
7 8 11 ↑
8 15 16 ↑
9 16 17 ↑
10 18 19 ↑
11 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 11 Watson-Crick/Watson-Crick cis y
2 4 8 Hoogsteen/Watson-Crick trans
3 5 7 O2'/Sugar ?
4 9 10 O2'/Sugar ?
5 16 17 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters