Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2ogm10.i1026-1049
Source: [PDB-id:chain] 2ogm:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-571519
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (1026, 1049)
Primary structure ('_': anchors) _UCAAAGAGUGCGUAAUAGCUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 ↑
3 5 6 ↑
4 11 12 ↑
5 12 13 ↑
6 17 18 ↑
7 18 19 ↑
8 19 20 ↑
9 20 21 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 4 Hoogsteen/O2' ?
2 3 5 O2'/Watson-Crick ?
3 7 9 O2'/Bifurcated ?
4 7 22 Watson-Crick/Watson-Crick cis
5 12 19 Watson-Crick/Watson-Crick cis
6 13 14 Hoogsteen/Watson-Crick cis y
7 13 18 Hoogsteen/Sugar trans
8 14 16 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters