Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Hairpin pdb2ogm10.e2638-2652
Source: [PDB-id:chain] 2ogm:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE PLEUROMUTILIN DERIVATIVE SB-571519
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (2638, 2652)
Primary structure ('_': anchors) _UGAAAGCAUCUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 10 &larr
4 8 9 ↑
5 9 10 ↑
6 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 O2'/Bifurcated ?
2 1 15 Watson-Crick/Watson-Crick cis
3 2 12 Hoogsteen/Watson-Crick trans y
4 2 14 Watson-Crick/Watson-Crick trans y
5 3 12 O2'/Bifurcated ?
6 12 14 Hoogsteen/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters