Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-2-2-0-5-Multiloop pdb2o451A.m538-1205
Source: [PDB-id:chain] 2o45:A (&rarr PDB)
Source: Information STRUCTURE OF THE 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE RU-69874
Source: Compound 23S RRNA
Source: Resolution 3.60 ANGSTROMS.
Position (543, 1200), (548, 631), (634, 772), (775, 1140), (1141, 1194)
Primary structure ('_': anchors) _GACU_-_GA_-_UU_-__-_CGGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo, 8: C4'-exo, 10: C2'-exo, 13: C4'-exo, 18: C4'-exo, 19: O4'-endo, 20: C4'-exo, 21: C4'-exo, 22: C4'-exo, 23: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 6 ↑
3 7 9 &larr
4 11 12 ↑
5 14 17 ↓
6 15 16 ↑
7 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 23 Watson-Crick/Watson-Crick cis
2 3 11 O2'/Watson-Crick trans
3 5 9 Sugar/Watson-Crick trans y
4 6 7 Watson-Crick/Watson-Crick cis
5 10 11 Watson-Crick/Watson-Crick cis
6 11 21 C/O2' ?
7 14 15 Watson-Crick/Watson-Crick cis
8 16 17 Watson-Crick/Watson-Crick cis
9 19 20 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters