Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Segment pdb2o451A.i852-866
Source: [PDB-id:chain] 2o45:A (&rarr PDB)
Source: Information STRUCTURE OF THE 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE RU-69874
Source: Compound 23S RRNA
Source: Resolution 3.60 ANGSTROMS.
Position (852, 866)
Primary structure ('_': anchors) _AACUCCGAAGGGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
8: C2'-exo, 9: C2'-exo, 11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 10: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 4
2 4 5
3 7 8
4 11 12
5 12 13
6 13 14
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 9 10 Bifurcated/Hoogsteen cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters