Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2o451A.i1023-1046
Source: [PDB-id:chain] 2o45:A (&rarr PDB)
Source: Information STRUCTURE OF THE 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE RU-69874
Source: Compound 23S RRNA
Source: Resolution 3.60 ANGSTROMS.
Position (1023, 1046)
Primary structure ('_': anchors) _UCAAAGAGUGCGUAAUAGCUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 5: C4'-exo, 13: C2'-exo, 23: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 17 18
3 18 19
4 21 22
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 7 Hoogsteen/O2' ?
2 9 10 Hoogsteen/O2' ?
3 10 21 Watson-Crick/Watson-Crick cis
4 12 19 Watson-Crick/Watson-Crick cis
5 14 16 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters