Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-6-Internal Loop pdb2o441A.n1781-1804
Source: [PDB-id:chain] 2o44:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE JOSAMYCIN
Source: Compound 23S RRNA
Source: Resolution 3.30 ANGSTROMS.
Position (1782, 1803), (1789, 1796)
Primary structure ('_': anchors) _GGAGCG_-_UGCGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		13: C2'-exo, 14: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 3 15 →
5 4 5 ↑
6 5 6 ↑
7 7 11 →
8 9 10 ↑
9 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis y
2 2 15 Hoogsteen/Sugar trans
3 3 14 O2'/Bifurcated ?
4 8 9 Watson-Crick/Watson-Crick cis
5 13 14 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters