Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2o441A.i596-619
Source: [PDB-id:chain] 2o44:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE JOSAMYCIN
Source: Compound 23S RRNA
Source: Resolution 3.30 ANGSTROMS.
Position (596, 619)
Primary structure ('_': anchors) _GAGUCCGAAUAGGGCGGCAUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 11: C4'-exo, 17: C2'-exo, 21: C2'-exo, 23: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 ↑
3 12 13 ↑
4 13 14 ↑
5 14 15 ↑
6 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 13 Watson-Crick/Watson-Crick cis
2 8 10 O2'/Sugar ?
3 11 12 Bifurcated/O2' ?
4 19 20 Hoogsteen/Watson-Crick cis y
5 19 22 O2'/Bifurcated ?
6 20 22 O2'/Bifurcated ?
7 22 23 C/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters