Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'24-Segment pdb2o441A.i1514-1539
Source: [PDB-id:chain] 2o44:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE JOSAMYCIN
Source: Compound 23S RRNA
Source: Resolution 3.30 ANGSTROMS.
Position (1514, 1539)
Primary structure ('_': anchors) _CAAGAAAAGCUUCUAAACGUUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-exo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 4 ↑
2 6 7 ↑
3 7 8 ↑
4 8 9 ↑
5 9 10 ↑
6 11 12 ↑
7 12 13 ↑
8 14 15 ↑
9 16 17 ↑
10 17 18 ↑
11 18 19 ↑
12 19 20 ↑
13 20 21 ↑
14 24 25 ↑
15 25 26 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 22 23 Hoogsteen/O2' ?
2 23 24 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters