Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'24-Segment pdb2o441A.i1514-1539
Source: [PDB-id:chain] 2o44:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE JOSAMYCIN
Source: Compound 23S RRNA
Source: Resolution 3.30 ANGSTROMS.
Position (1514, 1539)
Primary structure ('_': anchors) _CAAGAAAAGCUUCUAAACGUUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C4'-exo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 4
2 6 7
3 7 8
4 8 9
5 9 10
6 11 12
7 12 13
8 14 15
9 16 17
10 17 18
11 18 19
12 19 20
13 20 21
14 24 25
15 25 26
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 22 23 Hoogsteen/O2' ?
2 23 24 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters