Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2o441A.i1026-1049
Source: [PDB-id:chain] 2o44:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE JOSAMYCIN
Source: Compound 23S RRNA
Source: Resolution 3.30 ANGSTROMS.
Position (1026, 1049)
Primary structure ('_': anchors) _UCAAAGAGUGCGUAAUAGCUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5
2 5 6
3 7 23
4 10 11
5 11 12
6 12 13
7 13 14
8 15 16
9 17 18
10 18 19
11 19 20
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 5 O2'/Hoogsteen ?
2 7 9 C/O2' ?
3 12 19 Watson-Crick/Watson-Crick cis
4 13 18 Bifurcated/Sugar trans y
5 14 16 O2'/Watson-Crick ?
6 23 24 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters