Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-2-Internal Loop pdb2o43FA.n2405-2463
Source: [PDB-id:chain] 2o43:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE ERYTHROMYCYLAMINE
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.60 ANGSTROMS.
Position (2402, 2470), (2405, 2463)
Primary structure ('_': anchors) _ACGCGA_-_UC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 7: C4'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 9 →
2 9 10 ↑
3 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Hoogsteen/O2' ?
2 1 12 Watson-Crick/Watson-Crick cis
3 4 5 Watson-Crick/Watson-Crick cis y
4 5 10 Watson-Crick/Watson-Crick cis
5 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters