Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-2-Internal Loop pdb2o43FA.n1432-1456
Source: [PDB-id:chain] 2o43:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE ERYTHROMYCYLAMINE
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.60 ANGSTROMS.
Position (1429, 1462), (1432, 1456)
Primary structure ('_': anchors) _ACAUG_-_GC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 6: C2'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Watson-Crick/Watson-Crick cis y
3 3 4 Watson-Crick/O2' ?
4 6 7 Watson-Crick/O2' ?
5 7 8 Watson-Crick/Watson-Crick cis
6 9 10 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters