Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2o43FA.n1146-1194
Source: [PDB-id:chain] 2o43:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE ERYTHROMYCYLAMINE
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 3.60 ANGSTROMS.
Position (1150, 1190), (1154, 1186)
Primary structure ('_': anchors) _CGA_-_UCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 7 8
5 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis y
2 1 10 Watson-Crick/Watson-Crick cis
3 2 9 Watson-Crick/Hoogsteen cis y
4 3 8 Watson-Crick/Watson-Crick cis
5 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters