Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb2o431A.n819-867
Source: [PDB-id:chain] 2o43:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE ERYTHROMYCYLAMINE
Source: Compound 23S RRNA
Source: Resolution 3.60 ANGSTROMS.
Position (820, 866), (826, 859)
Primary structure ('_': anchors) _UGUAG_-_CCGAAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C4'-exo, 4: C4'-exo, 8: O4'-endo, 12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 6 ↑
2 5 12 →
3 6 7 ↑
4 10 11 ↑
5 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 3 12 O2'/Bifurcated ?
3 6 10 Watson-Crick/Watson-Crick cis
4 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters