Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2o431A.n706-717
Source: [PDB-id:chain] 2o43:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE ERYTHROMYCYLAMINE
Source: Compound 23S RRNA
Source: Resolution 3.60 ANGSTROMS.
Position (700, 722), (706, 717)
Primary structure ('_': anchors) _GGUGC_-_UCUC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 2 13 →
3 6 7 ↑
4 8 9 ↑
5 9 10 ↑
6 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 4 Hoogsteen/Sugar cis y
3 3 11 Watson-Crick/Watson-Crick cis y
4 4 11 Watson-Crick/Watson-Crick cis y
5 5 10 Watson-Crick/Watson-Crick cis
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters