Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-5-Internal Loop pdb2o431A.n1428-1463
Source: [PDB-id:chain] 2o43:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE ERYTHROMYCYLAMINE
Source: Compound 23S RRNA
Source: Resolution 3.60 ANGSTROMS.
Position (1429, 1462), (1432, 1456)
Primary structure ('_': anchors) _GC_-_ACAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 6: C2'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 3 O2'/Bifurcated ?
3 2 10 Watson-Crick/Watson-Crick cis y
4 4 5 Watson-Crick/Watson-Crick cis
5 5 6 Watson-Crick/O2' ?
6 8 9 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters