Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-6-Internal Loop pdb2o431A.n1352-1547
Source: [PDB-id:chain] 2o43:A (&rarr PDB)
Source: Information STRUCTURE OF 23S RRNA OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS IN COMPLEX WITH THE MACROLIDE ERYTHROMYCYLAMINE
Source: Compound 23S RRNA
Source: Resolution 3.60 ANGSTROMS.
Position (1360, 1539), (1364, 1532)
Primary structure ('_': anchors) _GGA_-_GUUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		9: C4'-exo, 10: C2'-exo, 13: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 7 →
3 7 8 ↑
4 11 12 ↑
5 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 11 O2'/Watson-Crick ?
3 3 10 C/O2' ?
4 4 10 O2'/C ?
5 4 11 Watson-Crick/O2' ?
6 5 6 Watson-Crick/Watson-Crick cis
7 5 11 Sugar/O2' ?
8 9 10 Sugar/O2' ?
9 10 11 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters