Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb2nz4FQ.n102-119
Source: [PDB-id:chain] 2nz4:Q (&rarr PDB)
Source: Information STRUCTURAL INVESTIGATION OF THE GLMS RIBOZYME BOUND TO ITS CATALYTIC COFACTOR
Source: Compound GLMS RIBOZYME
FLIPPED INTERNAL
Source: Resolution 2.50 ANGSTROMS.
Position (96, 126), (102, 119)
Primary structure ('_': anchors) _GACAAA_-_UAAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 14: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 13
5 5 6
6 6 7
7 7 8
8 9 10
9 10 11
10 11 12
11 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 5 12 Watson-Crick/Hoogsteen trans
3 6 11 Watson-Crick/Hoogsteen trans
4 7 10 Watson-Crick/Bifurcated trans
5 8 9 Watson-Crick/Watson-Crick cis
6 9 10 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters