Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb2nz41R.n89-133
Source: [PDB-id:chain] 2nz4:R (&rarr PDB)
Source: Information STRUCTURAL INVESTIGATION OF THE GLMS RIBOZYME BOUND TO ITS CATALYTIC COFACTOR
Source: Compound GLMS RIBOZYME
Source: Resolution 2.50 ANGSTROMS.
Position (96, 126), (102, 119)
Primary structure ('_': anchors) _UAAAU_-_GACAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 3 12 →
3 4 5 ↑
4 5 6 ↑
5 6 7 ↑
6 8 9 ↑
7 9 10 ↑
8 10 11 ↑
9 12 13 ↑
10 13 14 ↑
11 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 4 11 Watson-Crick/Hoogsteen trans
3 5 10 Watson-Crick/Hoogsteen trans
4 6 7 Bifurcated/O2' ?
5 6 9 Watson-Crick/Bifurcated trans
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters