Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2nz41R.i44-67
Source: [PDB-id:chain] 2nz4:R (&rarr PDB)
Source: Information STRUCTURAL INVESTIGATION OF THE GLMS RIBOZYME BOUND TO ITS CATALYTIC COFACTOR
Source: Compound GLMS RIBOZYME
Source: Resolution 2.50 ANGSTROMS.
Position (44, 67)
Primary structure ('_': anchors) _GAGAUUUCGGCGGAUGACUCCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 6: O4'-endo, 7: C3'-exo, 8: C2'-endo, 16: C3'-exo, 18: C2'-exo, 21: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 9 10 ↑
6 10 11 ↑
7 11 12 ↑
8 12 13 ↑
9 13 14 ↑
10 14 15 ↑
11 17 18 ↑
12 18 19 ↑
13 19 20 ↑
14 20 21 ↑
15 21 22 ↑
16 22 23 ↑
17 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 8 Watson-Crick/Watson-Crick trans
2 4 8 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters