Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2nre1F.i3-26
Source: [PDB-id:chain] 2nre:F (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF PSEUDOUDIRINDE SYNTHASE TRUA IN COMPLEX WITH LEUCYL TRNA
Source: Compound LEUCYL TRNA
Source: Resolution 4.00 ANGSTROMS.
Position (3, 26)
Primary structure ('_': anchors) _UGGUGGAAUUGGUAGACACGCU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-endo, 2: C1'-endo, 3: C2'-exo, 8: C4'-exo, 9: C2'-exo, 10: C4'-exo, 11: C4'-exo, 12: O4'-endo, 13: C2'-endo, 15: C4'-exo, 16: C4'-exo, 18: C2'-exo, 19: C1'-endo, 20: C2'-exo, 22: C2'-exo, 24: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 21 →
2 6 7 ↑
3 6 19 →
4 15 16 ↑
5 17 18 ↑
6 18 19 ↑
7 19 20 ↑
8 21 22 ↑
9 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 20 Watson-Crick/Watson-Crick cis
2 6 18 Watson-Crick/Watson-Crick cis y
3 7 16 O2'/Bifurcated ?
4 7 17 Bifurcated/O2' ?
5 8 16 O2'/Bifurcated ?
6 17 18 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters