Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb2noq1B.i27-42
Source: [PDB-id:chain] 2noq:B (&rarr PDB)
Source: Information STRUCTURE OF RIBOSOME-BOUND CRICKET PARALYSIS VIRUS IRES RNA
Source: Compound 18S RIBOSOMAL RNA
Source: Resolution 7.30 ANGSTROMS.
Position (27, 42)
Primary structure ('_': anchors) _GCGGUAAUACGGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-endo, 7: C4'-exo, 10: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 8 11
4 12 13
5 13 14
6 14 15
7 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 10 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters