Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'27-Segment pdb2noq1A.i120-148
Source: [PDB-id:chain] 2noq:A (&rarr PDB)
Source: Information STRUCTURE OF RIBOSOME-BOUND CRICKET PARALYSIS VIRUS IRES RNA
Source: Compound CRPV IRES
Source: Resolution 7.30 ANGSTROMS.
Position (120, 148)
Primary structure ('_': anchors) _CAAUAUCCAGGAAGCCCUCUCUGCGGU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 5 6 ↑
4 6 7 ↑
5 11 12 ↑
6 12 13 ↑
7 13 14 ↑
8 14 15 ↑
9 20 21 ↑
10 26 27 ↑
11 28 29 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 10 11 Hoogsteen/O2' ?
2 22 23 O2'/Watson-Crick ?
3 25 26 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters